Umi_tools
Introduction
Umi_tools is a collection of tools for handling Unique Molecular Identifiers in NGS data sets.
For more information, please check:
BioContainers: https://biocontainers.pro/tools/umi_tools
Home page: https://github.com/CGATOxford/UMI-tools
Versions
1.1.4
Commands
umi_tools
Module
You can load the modules by:
module load biocontainers
module load umi_tools
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run umi_tools on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=umi_tools
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers umi_tools