Pyranges

Introduction

Pyranges are collections of intervals that support comparison operations (like overlap and intersect) and other methods that are useful for genomic analyses.

For more information, please check its website: https://biocontainers.pro/tools/pyranges and its home page on Github.

Versions

  • 0.0.115

Commands

  • python

  • python3

Module

You can load the modules by:

module load biocontainers
module load pyranges

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Pyranges on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pyranges
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers pyranges