Pyranges
Introduction
Pyranges
are collections of intervals that support comparison operations (like overlap and intersect) and other methods that are useful for genomic analyses.
For more information, please check its website: https://biocontainers.pro/tools/pyranges and its home page on Github.
Versions
0.0.115
Commands
python
python3
Module
You can load the modules by:
module load biocontainers
module load pyranges
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Pyranges on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=pyranges
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers pyranges