Mcl

Introduction

Mcl is short for the Markov Cluster Algorithm, a fast and scalable unsupervised cluster algorithm for graphs.

For more information, please check its website: https://biocontainers.pro/tools/mcl and its home page: http://micans.org/mcl/.

Versions

  • 14.137-pl5262

Commands

  • clm

  • clmformat

  • clxdo

  • mcl

  • mclblastline

  • mclcm

  • mclpipeline

  • mcx

  • mcxarray

  • mcxassemble

  • mcxdeblast

  • mcxdump

  • mcxi

  • mcxload

  • mcxmap

  • mcxrand

  • mcxsubs

Module

You can load the modules by:

module load biocontainers
module load mcl

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Mcl on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mcl
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers mcl