Eggnog-mapper
Introduction
Eggnog-mapper
is a tool for fast functional annotation of novel sequences.
For more information, please check its website: https://biocontainers.pro/tools/eggnog-mapper and its home page on Github.
Versions
2.1.7
Commands
create_dbs.py
download_eggnog_data.py
emapper.py
hmm_mapper.py
hmm_server.py
hmm_worker.py
vba_extract.py
Module
You can load the modules by:
module load biocontainers
module load eggnog-mapper
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Eggnog-mapper on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 24
#SBATCH --job-name=eggnog-mapper
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers eggnog-mapper
emapper.py -i proteins.faa --cpu 24 -o protein.out
emapper.py -m diamond --itype CDS -i cDNA.fasta -o cdna.out --cpu 24