Wiggletools
Introduction
The WiggleTools package allows genomewide data files to be manipulated as numerical functions, equipped with all the standard functional analysis operators (sum, product, product by a scalar, comparators), and derived statistics (mean, median, variance, stddev, t-test, Wilcoxon’s rank sum test, etc).
For more information, please check:
Docker hub: https://hub.docker.com/r/ensemblorg/wiggletools
Home page: https://github.com/Ensembl/WiggleTools
Versions
1.2.11
Commands
wiggletools
Module
You can load the modules by:
module load biocontainers
module load wiggletools
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run wiggletools on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=wiggletools
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers wiggletools
wiggletools test/fixedStep.wig
wiggletools test/fixedStep.bw
wiggletools test/bedfile.bg
wiggletools test/overlapping.bed
wiggletools test/bam.bam
wiggletools test/cram.cram
wiggletools test/vcf.vcf
wiggletools test/bcf.bcf