Snap-aligner

Introduction

Snap-aligner (Scalable Nucleotide Alignment Program) is a fast and accurate read aligner for high-throughput sequencing data.

For more information, please check its website: https://biocontainers.pro/tools/snap-aligner and its home page: http://snap.cs.berkeley.edu/.

Versions

2.0.0

Commands

snap-aligner

Module

You can load the modules by:

module load biocontainers
module load snap-aligner

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Snap-aligner on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=snap-aligner
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers snap-aligner