Fseq

Introduction

Fseq is a feature density estimator for high-throughput sequence tags.

For more information, please check its home page: https://fureylab.web.unc.edu/software/fseq/.

Versions

• 2.0.3

Commands

• fseq2

Module

You can load the modules by:

module load biocontainers
module load fseq

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Fseq on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=fseq
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers fseq