FastANI

Introduction

FastANI is developed for fast alignment-free computation of whole-genome Average Nucleotide Identity (ANI).

For more information, please check its website: https://biocontainers.pro/tools/fastani and its home page on Github.

Versions

1.32
1.33

Commands

fastANI

Module

You can load the modules by:

module load biocontainers
module load fastani

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run FastANI on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=fastani
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers fastani

fastANI -q cmm.fasta -r cms.fasta -o cm_cs_out

fastANI -q cmm.fasta -r cms.fasta  --visualize -o cm_cs_visualize_out