Snap

Introduction

Snap is a semi-HMM-based Nucleic Acid Parser – gene prediction tool.

For more information, please check its website: https://biocontainers.pro/tools/snap and its home page: http://korflab.ucdavis.edu/software.html.

Versions

• 2013_11_29

Commands

• snap

Module

You can load the modules by:

module load biocontainers
module load snap

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Snap on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=snap
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers snap