Modeltest-ng

Introduction

ModelTest-NG is a tool for selecting the best-fit model of evolution for DNA and protein alignments. ModelTest-NG supersedes jModelTest and ProtTest in one single tool, with graphical and command console interfaces.

For more information, please check:
BioContainers: https://biocontainers.pro/tools/modeltest-ng
Home page: https://github.com/ddarriba/modeltest

Versions

  • 0.1.7

Commands

  • modeltest-ng

  • modeltest-ng-mpi

Module

You can load the modules by:

module load biocontainers
module load modeltest-ng

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run modeltest-ng on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=modeltest-ng
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers modeltest-ng