Macs3

Introduction

MACS3 is Model-based Analysis of ChIP-Seq for identifying transcript factor.

For more information, please check its | Docker hub: https://hub.docker.com/r/lbmc/macs3/3.0.0a6 and its home page on Github.

Versions

  • 3.0.0a6

Commands

  • macs3

Module

You can load the modules by:

module load biocontainers
module load macs3

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Macs3 on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=macs3
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers macs3

macs3 callpeak -t ChIP.bam -c Control.bam -f BAM -g hs -n test -B -q 0.01