Proteinortho
Introduction
Proteinortho
is a tool to detect orthologous genes within different species.
For more information, please check its website: https://biocontainers.pro/tools/proteinortho and its home page on Gitlab.
Versions
6.0.33
Commands
proteinortho
proteinortho2html.pl
proteinortho2tree.pl
proteinortho2xml.pl
proteinortho6.pl
proteinortho_cleanupblastgraph
proteinortho_clustering
proteinortho_compareProteinorthoGraphs.pl
proteinortho_do_mcl.pl
proteinortho_extract_from_graph.pl
proteinortho_ffadj_mcs.py
proteinortho_formatUsearch.pl
proteinortho_grab_proteins.pl
proteinortho_graphMinusRemovegraph
proteinortho_history.pl
proteinortho_singletons.pl
proteinortho_summary.pl
proteinortho_treeBuilderCore
Module
You can load the modules by:
module load biocontainers
module load proteinortho
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Proteinortho on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=proteinortho
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers proteinortho
proteinortho6.pl test/C.faa test/E.faa test/L.faa test/M.faa