Clustalw

Introduction

Clustalw is a general purpose multiple alignment program for DNA or proteins.

For more information, please check its website: https://biocontainers.pro/tools/clustalw and its home page: http://www.clustal.org/clustal2/.

Versions

2.1

Commands

clustalw

Module

You can load the modules by:

module load biocontainers
module load clustalw

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Clustalw on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=clustalw
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers clustalw

clustalw -tree -align -infile=seq.faa