T-coffee

Introduction

T-coffee is a multiple sequence alignment software using a progressive approach.

For more information, please check its website: https://biocontainers.pro/tools/t-coffee and its home page on Github.

Versions

13.45.0.4846264

Commands

t_coffee

Module

You can load the modules by:

module load biocontainers
module load t-coffee

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run T-coffee on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=t-coffee
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers t-coffee

t_coffee  OG0002077.fa -mode  expresso