Mob_suite

Introduction

MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies.

For more information, please check:
Docker hub: https://hub.docker.com/r/kbessonov/mob_suite
Home page: https://github.com/phac-nml/mob-suite

Versions

  • 3.0.3

Commands

  • mob_cluster

  • mob_init

  • mob_recon

  • mob_typer

Module

You can load the modules by:

module load biocontainers
module load mob_suite

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run mob_suite on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mob_suite
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers mob_suite