Fasta3
Introduction
Fasta3
is a suite of programs for searching nucleotide or protein databases with a query sequence.
For more information, please check its website: https://biocontainers.pro/tools/fasta3 and its home page on Github.
Versions
36.3.8
Commands
fasta36
fastf36
fastm36
fasts36
fastx36
fasty36
ggsearch36
glsearch36
lalign36
ssearch36
tfastf36
tfastm36
tfasts36
tfastx36
tfasty36
Module
You can load the modules by:
module load biocontainers
module load fasta3
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Fasta3 on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=fasta3
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers fasta3
fasta36 input.fasta genome.fasta