Talon

Introduction

Talon is a Python package for identifying and quantifying known and novel genes/isoforms in long-read transcriptome data sets.

For more information, please check its website: https://biocontainers.pro/tools/talon and its home page on Github.

Versions

  • 5.0

Commands

  • talon

  • talon_abundance

  • talon_create_GTF

  • talon_fetch_reads

  • talon_filter_transcripts

  • talon_generate_report

  • talon_get_sjs

  • talon_initialize_database

  • talon_label_reads

  • talon_reformat_gtf

  • talon_summarize

Module

You can load the modules by:

module load biocontainers
module load talon

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Talon on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=talon
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers talon