Talon
Introduction
Talon
is a Python package for identifying and quantifying known and novel genes/isoforms in long-read transcriptome data sets.
For more information, please check its website: https://biocontainers.pro/tools/talon and its home page on Github.
Versions
5.0
Commands
talon
talon_abundance
talon_create_GTF
talon_fetch_reads
talon_filter_transcripts
talon_generate_report
talon_get_sjs
talon_initialize_database
talon_label_reads
talon_reformat_gtf
talon_summarize
Module
You can load the modules by:
module load biocontainers
module load talon
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Talon on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=talon
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers talon