Meme

Introduction

Meme is a collection of tools for the discovery and analysis of sequence motifs.

For more information, please check its website: https://biocontainers.pro/tools/meme and its home page: https://meme-suite.org/meme/.

Versions

  • 5.3.3

  • 5.4.1

  • 5.5.0

Commands

  • ame

  • centrimo

  • dreme

  • dust

  • fimo

  • glam2

  • glam2scan

  • gomo

  • mast

  • mcast

  • meme

  • meme-chip

  • momo

  • purge

  • spamo

  • tomtom

Module

You can load the modules by:

module load biocontainers
module load meme

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Meme on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=meme
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers meme

meme seq.fasta -dna -mod oops -pal

meme-chip Klf1.fna -o memechip_klf1_out