Meme
Introduction
Meme
is a collection of tools for the discovery and analysis of sequence motifs.
For more information, please check its website: https://biocontainers.pro/tools/meme and its home page: https://meme-suite.org/meme/.
Versions
5.3.3
5.4.1
5.5.0
Commands
ame
centrimo
dreme
dust
fimo
glam2
glam2scan
gomo
mast
mcast
meme
meme-chip
momo
purge
spamo
tomtom
Module
You can load the modules by:
module load biocontainers
module load meme
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Meme on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=meme
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers meme
meme seq.fasta -dna -mod oops -pal
meme-chip Klf1.fna -o memechip_klf1_out