Bamliquidator
Introduction
Bamliquidator
is a set of tools for analyzing the density of short DNA sequence read alignments in the BAM file format.
For more information, please check its | Docker hub: https://hub.docker.com/r/bioliquidator/bamliquidator/ and its home page on Github.
Versions
1.5.2
Commands
bamliquidator
bamliquidator_bins
bamliquidator_regions
bamliquidatorbatch
Module
You can load the modules by:
module load biocontainers
module load bamliquidator
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Bamliquidator on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=bamliquidator
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers bamliquidator