Metilene
Introduction
Metilene is a versatile tool to study the effect of epigenetic modifications in differentiation/development, tumorigenesis, and systems biology on a global, genome-wide level.
For more information, please check:
BioContainers: https://biocontainers.pro/tools/metilene
Versions
0.2.8
Commands
metilene
metilene_input.pl
metilene_output.pl
metilene_output.R
Module
You can load the modules by:
module load biocontainers
module load metilene
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run metilene on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=metilene
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers metilene
metilene -a g1 -b g2 methylation-file