Exonerate

Introduction

Exonerate is a generic tool for pairwise sequence comparison/alignment.

For more information, please check its home page: https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate.

Versions

• 2.4.0

Commands

• exonerate

Module

You can load the modules by:

module load biocontainers
module load exonerate

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Exonerate on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=exonerate
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers exonerate

exonerate  -m genome2genome  cms.fasta cmm.fasta > cm_vs_cs.out