Sprod

Introduction

Sprod: De-noising Spatially Resolved Transcriptomics Data Based on Position and Image Information.

For more information, please check:
Home page: https://github.com/yunguan-wang/SPROD

Versions

  • 1.0

Commands

  • python

  • python3

  • sprod.py

Module

You can load the modules by:

module load biocontainers
module load sprod

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run sprod on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=sprod
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers sprod

python3 test_examples.py