Assembly-stats

Introduction

Assembly-stats is a tool to get assembly statistics from FASTA and FASTQ files.

For more information, please check its website: https://biocontainers.pro/tools/assembly-stats and its home page on Github.

Versions

1.0.1

Commands

assembly-stats

Module

You can load the modules by:

module load biocontainers
module load assembly-stats

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Assembly-stats on our our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 00:10:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=assembly-stats
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers assembly-stats

assembly-stats seq.fasta