Panacota
Introduction
Panacota
is a software providing tools for large scale bacterial comparative genomics.
For more information, please check its website: https://biocontainers.pro/tools/panacota and its home page on Github.
Versions
1.3.1
Commands
PanACoTA
Module
You can load the modules by:
module load biocontainers
module load panacota
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run Panacota on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=panacota
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers panacota
PanACoTA annotate \
-d Examples/genomes_init \
-l Examples/input_files/list_genomes.lst \
-r Examples/2-res-QC -Q