MAFFT

Introduction

MAFFT is a multiple alignment program for amino acid or nucleotide sequences.

For more information, please check its website: https://biocontainers.pro/tools/mafft and its home page: https://mafft.cbrc.jp/alignment/software/.

Versions

  • 7.475

  • 7.490

Commands

  • einsi

  • fftns

  • fftnsi

  • ginsi

  • linsi

  • mafft

  • mafft-distance

  • mafft-einsi

  • mafft-fftns

  • mafft-fftnsi

  • mafft-ginsi

  • mafft-homologs.rb

  • mafft-linsi

  • mafft-nwns

  • mafft-nwnsi

  • mafft-profile

  • mafft-qinsi

  • mafft-sparsecore.rb

  • mafft-xinsi

  • nwns

  • nwnsi

Module

You can load the modules by:

module load biocontainers
module load mafft

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run MAFFT on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mafft
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers mafft