MAFFT
Introduction
MAFFT
is a multiple alignment program for amino acid or nucleotide sequences.
For more information, please check its website: https://biocontainers.pro/tools/mafft and its home page: https://mafft.cbrc.jp/alignment/software/.
Versions
7.475
7.490
Commands
einsi
fftns
fftnsi
ginsi
linsi
mafft
mafft-distance
mafft-einsi
mafft-fftns
mafft-fftnsi
mafft-ginsi
mafft-homologs.rb
mafft-linsi
mafft-nwns
mafft-nwnsi
mafft-profile
mafft-qinsi
mafft-sparsecore.rb
mafft-xinsi
nwns
nwnsi
Module
You can load the modules by:
module load biocontainers
module load mafft
Example job
Warning
Using #!/bin/sh -l
as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash
instead.
To run MAFFT on our clusters:
#!/bin/bash
#SBATCH -A myallocation # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=mafft
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out
module --force purge
ml biocontainers mafft