IGV

Introduction

IGV (Integrative Genomics Viewer) is a high-performance, easy-to-use, interactive tool for the visual exploration of genomic data.

For more information, please check its home page: http://www.broadinstitute.org/software/igv/home.

Versions

  • 2.11.9

  • 2.12.3

Commands

  • igv_hidpi.sh

  • igv.sh

Module

You can load the modules by:

module load biocontainers
module load igv

Interactive job

Since IGV requires GUI, it is recommended to run it within ThinLinc:

(base) UserID@bell-fe00:~ $ sinteractive -N1 -n12 -t4:00:00 -A myallocation
 salloc: Granted job allocation 12345869
 salloc: Waiting for resource configuration
 salloc: Nodes bell-a008 are ready for job
(base) UserID@bell-a008:~ $ module --force purge
(base) UserID@bell-a008:~ $ ml biocontainers igv
(base) UserID@bell-a008:~ $ igv.sh