Deepbgc

Introduction

Deepbgc is a tool for BGC detection and classification using deep learning.

For more information, please check its website: https://biocontainers.pro/tools/deepbgc and its home page on Github.

Versions

• 0.1.26

• 0.1.30

Commands

• deepbgc

Module

You can load the modules by:

module load biocontainers
module load deepbgc

Example job

Warning

Using #!/bin/sh -l as shebang in the slurm job script will cause the failure of some biocontainer modules. Please use #!/bin/bash instead.

To run Deepbgc on our clusters:

#!/bin/bash
#SBATCH -A myallocation     # Allocation name
#SBATCH -t 1:00:00
#SBATCH -N 1
#SBATCH -n 1
#SBATCH --job-name=deepbgc
#SBATCH --mail-type=FAIL,BEGIN,END
#SBATCH --error=%x-%J-%u.err
#SBATCH --output=%x-%J-%u.out

module --force purge
ml biocontainers deepbgc

export DEEPBGC_DOWNLOADS_DIR=$PWD
deepbgc download
deepbgc pipeline genome.fa  -o output